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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs2005199 1 rs4802803 chr19:52027587 ZNF175 chr19:52074531-52092990:+ -0.38 -4.54 7.26E-6 Carotid intima media thickness
THCA cis rs4803468 1 rs4803463 chr19:41911040 B3GNT8 chr19:41931265-41934635:- -0.36 -8.3 1.05E-15 Height
THCA cis rs4803468 1 rs4803463 chr19:41911040 EXOSC5 chr19:41892278-41903256:- -0.1 -3.4 0.000731 Height
THCA cis rs4803468 1 rs4803465 chr19:41918158 B3GNT8 chr19:41931265-41934635:- 0.36 8.53 1.91E-16 Height
THCA cis rs4803468 1 rs4803468 chr19:41922352 B3GNT8 chr19:41931265-41934635:- -0.36 -8.33 8.76E-16 Height
THCA cis rs4803468 1 rs4803469 chr19:41922775 B3GNT8 chr19:41931265-41934635:- -0.36 -8.33 8.76E-16 Height
THCA cis rs4803480 1 rs4803480 chr19:42066279 CEACAM21 chr19:42055886-42093196:+ 0.59 14.76 7.13E-41 Schizophrenia
THCA cis rs3760982 1 rs4803658 chr19:44290013 LYPD5 chr19:44300080-44324808:- -0.24 -5.01 7.69E-7 Breast cancer
THCA cis rs3760982 1 rs4803658 chr19:44290013 ZNF155 chr19:44488355-44502477:+ -0.25 -5.62 3.23E-8 Breast cancer
THCA cis rs3760982 1 rs4803658 chr19:44290013 ZNF404 chr19:44376516-44384288:- -0.26 -6.77 3.83E-11 Breast cancer
THCA cis rs7248104 1 rs4804411 chr19:7222377 ZNF557 chr19:7069471-7087976:+ -0.18 -3.77 0.000181 Triglycerides
THCA cis rs2111504 1 rs4805754 chr19:32837166 DPY19L3 chr19:32896677-32975236:+ 0.17 4.52 7.86E-6 Bipolar disorder
THCA cis rs2111504 1 rs4805754 chr19:32837166 ZNF507 chr19:32836514-32878571:+ 0.33 8.31 9.71E-16 Bipolar disorder
THCA cis rs2111504 1 rs4805755 chr19:32854470 DPY19L3 chr19:32896677-32975236:+ -0.19 -5.48 6.76E-8 Bipolar disorder
THCA cis rs2111504 1 rs4805755 chr19:32854470 ZNF507 chr19:32836514-32878571:+ -0.31 -7.96 1.26E-14 Bipolar disorder